Index A | C | D | F | G | L | M | N | P | R | S | T | V A add_feature_sparsity() (in module treasmo.ds) C calc_i() (treasmo.moran_vec.Moran method) D DynamicModule() (in module treasmo.ds) (in module treasmo.pl) DynamicSumMtx() (in module treasmo.pl) F feature_sparsity() (in module treasmo.tl) FindAllMarkers() (in module treasmo.ds) FindMarkers() (in module treasmo.ds) FindPathDynamics() (in module treasmo.ds) FindPathMarkers() (in module treasmo.ds) fit() (treasmo.lee_vec.Spatial_Pearson method) (treasmo.lee_vec.Spatial_Pearson_Local method) G get_gloc_from_atac_data() (in module treasmo.tl) Global_L() (in module treasmo.core) group_stat() (in module treasmo.ds) L Local_L() (in module treasmo.core) LocalCor_Heatmap() (in module treasmo.pl) M marker_test() (in module treasmo.ds) MarkerFilter() (in module treasmo.ds) module treasmo.core treasmo.ds treasmo.lee_vec treasmo.moran_vec treasmo.pl treasmo.tl Moran (class in treasmo.moran_vec) Morans_I() (in module treasmo.core) motif_summary() (in module treasmo.tl) N nearby_peaks() (in module treasmo.tl) P PathDynamics() (in module treasmo.ds) (in module treasmo.pl) peak2HomerInput() (in module treasmo.tl) peaks_within_distance() (in module treasmo.tl) Pearsonr() (in module treasmo.core) PFM2Motif() (in module treasmo.tl) R run_HOMER_motif() (in module treasmo.tl) S set_fit_request() (treasmo.lee_vec.Spatial_Pearson method) (treasmo.lee_vec.Spatial_Pearson_Local method) Spatial_Pearson (class in treasmo.lee_vec) Spatial_Pearson_Local (class in treasmo.lee_vec) T TFBS_match() (in module treasmo.tl) TimeBinData() (in module treasmo.ds) TimeBinProportion() (in module treasmo.ds) treasmo.core module treasmo.ds module treasmo.lee_vec module treasmo.moran_vec module treasmo.pl module treasmo.tl module V visualize_marker() (in module treasmo.pl)